PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000676216
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 355aa    MW: 38457.5 Da    PI: 8.5574
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000676216genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12.1e-2951109259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ +p+++++tY  +Hnh+
  MDP0000676216  51 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLNPTMLIVTYVCDHNHP 109
                    69*************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-3143111IPR003657WRKY domain
SuperFamilySSF1182902.35E-2548111IPR003657WRKY domain
SMARTSM007749.3E-3550110IPR003657WRKY domain
PROSITE profilePS5081131.36451111IPR003657WRKY domain
PfamPF031066.5E-2552109IPR003657WRKY domain
CDDcd062222.51E-8243302No hitNo description
PfamPF134561.2E-5244305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEDSPSSASE DDTQVATPLP KKRRGVQKRV VSVPIGDVEG SKSKGEGHPP SDSWAWRKYG  60
QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRLNPTMLIV TYVCDHNHPM PTTKANQSSS  120
VTPTTITATA TSPTTESELP AKTEELTIFT SQVDLDLSDD SPTLLSDFGW FNDAASTVVL  180
ESPICLGNSS CMNNDVATRL KDEDEYLFAD LGELPEGSVI FRHRNRMVES DDQNRRCSLS  240
AVLNFDGSVS NAKXGAGFVV RNEDGLVIGA GAFNLNGXII NEAEARALKE GLAYIKRKGF  300
NKKGIQGGNV RSGRQEYAGK EGIEKQKTKR QQRGGSGERE KGGAALLGSV RVER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-18511111574WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840331e-58GU984033.1 Cucumis sativus WRKY protein (WRKY47) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008381191.10.0PREDICTED: probable WRKY transcription factor 69
SwissprotQ93WV55e-75WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLM5X8S61e-120M5X8S6_PRUPE; Uncharacterized protein
STRINGGLYMA12G33990.15e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.21e-67WRKY DNA-binding protein 69